Soluble Tumor Necrosis Factor Receptor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Soluble Tumor Necrosis Factor Receptor 1
  Conformer 1
(PDB) 		1ext (A)
  Conformer 2
(PDB) 		1ext (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 41 0.48   98 - 138
2 81 0.49   16 - 96
3 28 0.36   139 - 166

Sequence


           ____________________________________________________________________________________96__________________________________ 
 1ext(A) : **SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQ 
         :                                                                                                                          
 1ext(B) : MDSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQ 
           ____________________________________________________________________________________96__________________________________ 

           ____137___________________________________                                                                               
 1ext(A) : EKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIEN                                                                               
         :                                                                                                                          
 1ext(B) : EKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLP****                                                                               
           ____137___________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.9
Translation
(A) 		0.4
Closure
(%) 		33.8
Bending Residues
( green ) 		  96 - 101
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		10.5
Translation
(A) 		-0.7
Closure
(%) 		89.6
Bending Residues
( green ) 		  137 - 140
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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