Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridylate Kinase
  Conformer 1
(PDB) 		2j4j (A)
  Conformer 2
(PDB) 		2j4k (C)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 171 0.73   8 - 138   165 - 219
2 21 1.29   139 - 164

Sequence


           ________________________________________________________________________________________________________________________ 
 2j4j(A) : MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTA 
         :                                                                                                                          
 2j4k(C) : MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTA 
           ________________________________________________________________________________________________________________________ 

           _______________138_______________________164____________________________________________________                         
 2j4j(A) : AVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEeLLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV                         
         :                                                                                                                          
 2j4k(C) : AVAALVAEASSSKTLVVATNVDGVYEKDPRIY-----iPHLTTQDLR-----lLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV                         
           _______________138_______________________164____________________________________________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.0
Translation
(A) 		0.3
Closure
(%) 		98.7
Bending Residues
( green ) 		  138 - 139
  164 - 165
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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