X-31 Influenza Haemagglutinin Ha1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name X-31 Influenza Haemagglutinin Ha1
  Conformer 1
(PDB) 		6y5h (A)
  Conformer 2
(PDB) 		6y5k (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 249 0.26   48 - 290   301 - 306
2 52 0.89   20 - 47   291 - 300   307 - 320

Sequence


           ______________________________________47________________________________________________________________________________ 
 6y5h(A) : NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTW 
         :                                                                                                                          
 6y5k(A) : ******CLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTW 
           ______________________________________47________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6y5h(A) : TGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINS 
         :                                                                                                                          
 6y5k(A) : TGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________288_________300___306___________________                                           
 6y5h(A) : NGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPE                                           
         :                                                                                                                          
 6y5k(A) : NGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPE                                           
           ______________________________________288_________300___306___________________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.7
Translation
(A) 		-0.3
Closure
(%) 		55.7
Bending Residues
( green ) 		  47 - 48
  288 - 291
  300 - 301
  306 - 307
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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