Glutamate Receptor 4,Glutamate Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 4,Glutamate Receptor
  Conformer 1
(PDB) 		3en3 (A)
  Conformer 2
(PDB) 		3epe (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 140 0.32   3 - 105   215 - 251
2 113 0.37   106 - 214   252 - 255

Sequence


           ______________________________________________________________________________________________________105_______________ 
 3en3(A) : TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
         :                                                                                                                          
 3epe(A) : TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
           ______________________________________________________________________________________________________105_______________ 

           ___________________________________________________________________________________________214__________________________ 
 3en3(A) : EDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEA 
         :                                                                                                                          
 3epe(A) : EDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEA 
           ___________________________________________________________________________________________214__________________________ 

           _______250_______                                                                                                        
 3en3(A) : GVLDKLKNKWWYDKGEC                                                                                                        
         :                                                                                                                          
 3epe(A) : GVLDKLKNKWWYDKGEC                                                                                                        
           _______250_______                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.7
Translation
(A) 		-0.1
Closure
(%) 		99.6
Bending Residues
( green ) 		  105 - 106
  214 - 215
  250 - 252
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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