DynDom - Protein Domain Motions

Penicillin-Binding Protein 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Penicillin-Binding Protein 2
Conformer 1 (PDB)	2olu (A)
Conformer 2 (PDB)	2olv (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	410	0.61	70 - 91 293 - 690
2	182	2.92	92 - 292

Sequence

`______________________90________________________________________________________________________________________________` `2olu(A) : *KLQDPIPAKIYDKNGELVKTLDNGQRHEHVNLKDVPKSkDAVLATEDNRFYEHGALDYg--FGS--EGASTLTQQVVKDAFLs----IGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIY` `:` `2olv(A) : AKLQDPIPAKIYDKNGELVKTLDNGQRHEHVNLKDVPKSkDAVLATEDNRFYEHGALDYKRLFGAIGKgASTLTQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIY` `______________________90________________________________________________________________________________________________` `____________________________________________________________________________________________292_________________________` `2olu(A) : YSDGVTGIKAAAKYYFNKDLKDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLhYHKRITDKQWEDAKKIDLKANLVNRTPEERQNIDTNQDSEYNSYVNFVKSELnNKAFKD` `:` `2olv(A) : YSDGVTGIKAAAKYYFNKDLKDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLhYHKRITDKQWEDAKKIDLKANLVNRTPEERQNIDTNQDSEYNSYVNFVKSELnNKAFKD` `____________________________________________________________________________________________292_________________________` `________________________________________________________________________________________________________________________` `2olu(A) : ENLGNVLQSGIKIYTNdKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENkWATNHAIQDESSYQVDGSTFRNYDTK` `:` `2olv(A) : ENLGNVLQSGIKIYTNdKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENkWATNHAIQDESSYQVDGSTFRNYDTK` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2olu(A) : SHGTVSIYDALRQSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAsDYTAYlAElKGT` `:` `2olv(A) : SHGTVSIYDALRQSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAsDYTAYlAElKGT` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2olu(A) : FKPYGSAYGHGVSGVNgAKTGTGTYGAETYSQYNLPDNAAKDVWINGFTPQYTsVWgFSKVKQYGENSFVGHSQQEYPQFLYENVsKISSRDGEDFKRPSSVSGSIPSINVSGSQDNNTT` `:` `2olv(A) : FKPYGSAYGHGVSGVNgAKTGTGTYGAETYSQYNLPDNAAKDVWINGFTPQYTsVWgFSKVKQYGENSFVGHSQQEYPQFLYENVsKISSRDGEDFKRPSSVSGSIPSINVSGSQDNNTT` `________________________________________________________________________________________________________________________` `_____` `2olu(A) : NRSTH` `:` `2olv(A) : NRSTH` `_____`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	32.5
Translation (A)	-0.7
Closure (%)	77.7
Bending Residues ( green )	90 - 92 292 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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