Periplasmic Binding Protein/laci Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Periplasmic Binding Protein/laci Transcriptional Regulator
  Conformer 1
(PDB) 		5xss (A)
  Conformer 2
(PDB) 		5xsj (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 138 0.26   117 - 249   281 - 285
2 126 0.32   16 - 116   250 - 280

Sequence


           ______________________________________________________________________________________________________116_______________ 
 5xss(A) : PIKPKIVLISHIKTNPYWLDIKAGAERAAKERGAVVEFLGPTTASTEDGLKLFDMATSAKVSGIITYVQEEGQYKKKINSAMEKGIPVVTIDSDEEDSNRIAYVGTDNVLAGQVAGKEMV 
         :                                                                                                                          
 5xsj(X) : PIKPKIVLISHIKTNPYWLDIKAGAERAAKERGAVVEFLGPTTASTEDGLKLFDMATSAKVSGIITYVQEEGQYKKKINSAMEKGIPVVTIDSDEEDSNRIAYVGTDNVLAGQVAGKEMV 
           ______________________________________________________________________________________________________116_______________ 

           ___________________________________________________________________________________________________________________249__ 
 5xss(A) : KQIGTSGNVAIVMGGKNVKNQKERVEGFTQYIKSNSNLKIVDTDSSDAMLLEAEIITRKILNRNDNINALFCTSALDGIGAARAVKDLNYKDRVKIICFDDLDDTLSNIRNGLVSATIVQ 
         :                                                                                                                          
 5xsj(X) : KQIGTSGNVAIVMGGKNVKNQKERVEGFTQYIKSNSNLKIVDTDSSDAMLLEAEIITRKILNRNDNINALFCTSALDGIGAARAVKDLNYKDRVKIICFDDLDDTLSNIRNGLVSATIVQ 
           ___________________________________________________________________________________________________________________249__ 

           __________________272_____________                                                                                       
 5xss(A) : KSNEMGYRAVNIIMDKIEGKSsLIDVNVINKSDV                                                                                       
         :                                                                                                                          
 5xsj(X) : KSNEMGYRAVNIIMDKIEGKS-lIDVNVINKSDV                                                                                       
           __________________272_____________                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.4
Translation
(A) 		0.0
Closure
(%) 		32.8
Bending Residues
( green ) 		  116 - 117
  249 - 250
  272 - 281
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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