Predicted Glycosyltransferases

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Predicted Glycosyltransferases
  Conformer 1
(PDB) 		3c4v (A)
  Conformer 2
(PDB) 		3c48 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 196 0.74   3 - 196   391 - 407
2 186 0.76   197 - 390

Sequence


           ________________________________________________________________________________________________________________________ 
 3c4v(A) : MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLL 
         :                                                                                                                          
 3c48(B) : MRVAMISMHTSPLQQ-------gMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________196____________________________________________________ 
 3c4v(A) : RDLWRIPLIHTAHTLAAVdTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAAL 
         :                                                                                                                          
 3c48(B) : RDLWRIPLIHTAHTLAAVKtPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAAL 
           _________________________________________________________________196____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3c4v(A) : FDRDPDRNLRVIICGGP-tYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETR 
         :                                                                                                                          
 3c48(B) : FDRDPDRNLRVIICGGPStYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETR 
           ________________________________________________________________________________________________________________________ 

           ________386________________________________                                                                              
 3c4v(A) : IRMGEDAVEHARTFSWAATAAQLSSLYNDAIANE*********                                                                              
         :                                                                                                                          
 3c48(B) : IRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENVDGETHHG                                                                              
           ________386________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		95.8
Translation
(A) 		-0.1
Closure
(%) 		11.8
Bending Residues
( green ) 		  196 - 197
  386 - 392
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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