Protein (Ribokinase)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Ribokinase)
  Conformer 1
(PDB) 		1rkd (A)
  Conformer 2
(PDB) 		1gqt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 247 0.35   6 - 13   43 - 68   74 - 97   115 - 291   295 - 306
2 54 0.67   14 - 42   69 - 73   98 - 114   292 - 294

Sequence


           ________13___________________________42_______________________67____________________________97___________111____________ 
 1rkd(A) : AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPA 
         :                                                                                                                          
 1gqt(A) : AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPA 
           ________13___________________________42_______________________67____________________________97___________111____________ 

           ________________________________________________________________________________________________________________________ 
 1rkd(A) : LVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGF 
         :                                                                                                                          
 1gqt(A) : LVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________286_______________________                                                       
 1rkd(A) : RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR                                                       
         :                                                                                                                          
 1gqt(A) : RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQ*                                                       
           ________________________________________286_______________________                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.6
Translation
(A) 		-0.3
Closure
(%) 		10.5
Bending Residues
( green ) 		  13 - 14
  42 - 43
  67 - 77
  97 - 98
  111 - 118
  286 - 295
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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