Rod Shape-Determining Protein Mreb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Rod Shape-Determining Protein Mreb
  Conformer 1
(PDB) 		4czf (A)
  Conformer 2
(PDB) 		4czm (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 232 0.6   13 - 51   73 - 190   261 - 339
2 66 0.49   191 - 260

Sequence


           ________________________________________________________________________________________________________________________ 
 4czf(A) : ISNDIAIDLGTANTLIYQKGKGIVLNEPSVVALRN----kVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGSGNPKVIVCVPSGATAVERRAINDSCL 
         :                                                                                                                          
 4czm(A) : ISNDIAIDLGTANTLIYQKGKGIVLNEPSVVALRNVGGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGSGNPKVIVCVPSGATAVERRAINDSCL 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________190__________________________________________________________ 
 4czf(A) : NAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAP----gLSIDVKGRDLMQGVPREV 
         :                                                                                                                          
 4czm(A) : NAGARRVGLIDEPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIISYMRRHHNLLIGETTAERIKKEIGTARAPADGEGLSIDVKGRDLMQGVPREV 
           ___________________________________________________________190__________________________________________________________ 

           _________260_____________________________________________________________________________________                        
 4czf(A) : RISEKQAADALAEPVGQIVEAVKVALEATPPELASDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLEHPKWMKGVLEST                        
         :                                                                                                                          
 4czm(A) : RISEKQAADALAEPVGQIVEAVKVALEATPPELADDIADKGIMLTGGGALLRGLDAEIRDHTGLPVTVADDPLSCVALGCGKVLEHPKWMKGVLES*                        
           _________260_____________________________________________________________________________________                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.0
Translation
(A) 		0.2
Closure
(%) 		42.6
Bending Residues
( green ) 		  190 - 191
  260 - 261
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download