Staphylococcal Accessory Regulator A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Staphylococcal Accessory Regulator A
  Conformer 1
(PDB) 		1fzp (B)
  Conformer 2
(PDB) 		2frh (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 38 11.6   47 - 94
2 36 4.64   11 - 46

Sequence


           ____________________________________________43__________________________________________________________________________ 
 1fzp(B) : ****AITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDI----------vVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRIT* 
         :                                                                                                                          
 2frh(B) : GSHMAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITE 
           ___________________________________________143__________________________________________________________________________ 

           _______                                                                                                                  
 1fzp(B) : *******                                                                                                                  
         :                                                                                                                          
 2frh(B) : ANNEIEL                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		133.9
Translation
(A) 		11.5
Closure
(%) 		23.1
Bending Residues
( green ) 		  43 - 47
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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