DynDom - Protein Domain Motions

Sugar Abc Transporter, Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Sugar Abc Transporter, Sugar-Binding Protein
Conformer 1 (PDB)	2heu (A)
Conformer 2 (PDB)	2hfb (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	227	0.36	108 - 111 126 - 292 319 - 322 332 - 332 338 - 396
2	138	0.44	22 - 107 112 - 125 293 - 318 323 - 331 333 - 337

Sequence

`_____________________________________________________________________________________________106__111___________125_____` `2heu(A) : LFQGPSSTVTIEYFNQKKEMTKTLEEITRDFEKENPKIKvKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYG` `:` `2hfb(A) : *****TVTIEYFNQKKE-tKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYG` `______________________________________________________________________________________________93___98___________112_____` `________________________________________________________________________________________________________________________` `2heu(A) : IYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGD` `:` `2hfb(A) : IYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPI-kDDIKV-dILRINGSKQKNWEGAGYTDVIGAFARGD` `________________________________________________________________________________________________________________________` `_______________________________________292_______________________318__________331___337_________________________________` `2heu(A) : VLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEA` `:` `2hfb(A) : VL-tPNGSWAITAINEQKPNFKIGTF-iPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEY-tRPEV-qKYYDVDGSPTAIEGVKQAGEDSPLAG-tEYAFTDRHLVWLQQYWTSEA` `_______________________________________279_______________________305__________318___324_________________________________` `_______________________________` `2heu(A) : DFHTLTMNYVLTGDKQGMVNDLNAFFNPMKM` `:` `2hfb(A) : DFHTLT-nYVLTGDKQG-vNDLNAFFNPk` `_______________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.2
Translation (A)	0.0
Closure (%)	78.4
Bending Residues ( green )	106 - 109 111 - 112 125 - 126 292 - 293 318 - 323 331 - 333 337 - 338
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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