Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)
  Conformer 1
(PDB) 		1tbp (A)
  Conformer 2
(PDB) 		1ytb (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 91 1.04   70 - 160
2 83 0.56   64 - 69   161 - 237

Sequence


           _______69________________________________________________________________________________________160____________________ 
 1tbp(A) : MGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 
         :                                                                                                                          
 1ytb(A) : SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 
           _______69________________________________________________________________________________________160____________________ 

           ____________________________________________________________                                                             
 1tbp(A) : TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM                                                             
         :                                                                                                                          
 1ytb(A) : TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM                                                             
           ____________________________________________________________                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.0
Translation
(A) 		0.3
Closure
(%) 		91.7
Bending Residues
( green ) 		  69 - 70
  160 - 161
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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