DynDom - Protein Domain Motions

T-Complex Protein 1 Subunit Beta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	T-Complex Protein 1 Subunit Beta
Conformer 1 (PDB)	6ks6 (B)
Conformer 2 (PDB)	5gw5 (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	125	1.26	197 - 198 207 - 210 213 - 233 270 - 364 367 - 369
2	339	1.6	14 - 196 199 - 206 211 - 212 365 - 366 370 - 513
3	25	1.0	245 - 269

Sequence

`________________________________________________________________________________________________________________________` `6ks6(B) : VQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIE` `:` `5gw5(B) : *QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIE` `________________________________________________________________________________________________________________________` `_______________________________________________________________________196_______206_210____________________233_________` `6ks6(B) : GYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDK` `:` `5gw5(B) : GYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDK` `_______________________________________________________________________196_______206_210____________________233_________` `________________________269_________________________________________________________________________________________361_` `6ks6(B) : VKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG` `:` `5gw5(B) : VKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG` `________________________269_________________________________________________________________________________________361_` `________________________________________________________________________________________________________________________` `6ks6(B) : EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADM` `:` `5gw5(B) : EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADM` `________________________________________________________________________________________________________________________` `______________________________________` `6ks6(B) : RQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPR` `:` `5gw5(B) : RQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPR` `______________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	13.6
Translation (A)	0.4
Closure (%)	34.6
Bending Residues ( green )	196 - 200 206 - 207 210 - 213 361 - 370
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	24.9
Translation (A)	-0.5
Closure (%)	100.0
Bending Residues ( green )	233 - 247 269 - 270
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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