Thermolysin (E.C.3.4.24.27)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Thermolysin (E.C.3.4.24.27)
  Conformer 1
(PDB) 		1l3f (E)
  Conformer 2
(PDB) 		1kei (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 214 0.42   35 - 39   77 - 97   117 - 124   129 - 133   136 - 180   185 - 314
2 98 0.46   3 - 34   40 - 76   98 - 116   125 - 128   134 - 135   181 - 184

Sequence


           ________________________________34___39___________________________________76___________________97________________116____ 
 1l3f(E) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGDGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEM 
         :                                                                                                                          
 1kei(A) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGNGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSQM 
           ________________________________34___39___________________________________76___________________97________________116____ 

           _124_128__133___________________________________________179_____________________________________________________________ 
 1l3f(E) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
         :                                                                                                                          
 1kei(A) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
           _124_128__133___________________________________________179_____________________________________________________________ 

           ____________________________________________________________________________                                             
 1l3f(E) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
         :                                                                                                                          
 1kei(A) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
           ____________________________________________________________________________                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.6
Translation
(A) 		0.1
Closure
(%) 		96.1
Bending Residues
( green ) 		  34 - 35
  39 - 40
  76 - 77
  97 - 98
  116 - 117
  124 - 126
  128 - 129
  133 - 136
  179 - 185
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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