Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator (Ntrc Family)
  Conformer 1
(PDB) 		1ny5 (A)
  Conformer 2
(PDB) 		1ny6 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 133 0.99   161 - 164   172 - 181   183 - 183   188 - 275   279 - 308
2 110 0.74   139 - 160   165 - 171   182 - 182   184 - 187   276 - 278   309 - 381

Sequence


           ________________________________________________________________________________________________________________________ 
 1ny5(A) : MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 
         :                                                                                                                          
 1ny6(C) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ____________________________________159__164____171_______181___187_____________________________________________________ 
 1ny5(A) : LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
         :                                                                                                                          
 1ny6(C) : ****************EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
           ____________________________________159__164____171_______181___187_____________________________________________________ 

           ________________________________275______________________________308____________________________________________________ 
 1ny5(A) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
         :                                                                                                                          
 1ny6(C) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
           ________________________________275______________________________308____________________________________________________ 

           ________________________                                                                                                 
 1ny5(A) : NVIERAVLFSEGKFIDRGELSCLV                                                                                                 
         :                                                                                                                          
 1ny6(C) : NVIERAVLFSEGKFIDRGELSCLV                                                                                                 
           ________________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.0
Translation
(A) 		0.3
Closure
(%) 		84.8
Bending Residues
( green ) 		  159 - 161
  164 - 165
  171 - 172
  181 - 184
  187 - 188
  275 - 276
  278 - 279
  308 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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