Udp-Glucose 6-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Glucose 6-Dehydrogenase
  Conformer 1
(PDB) 		2o3j (A)
  Conformer 2
(PDB) 		2o3j (B)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 227 0.19   226 - 288   299 - 462
2 219 0.28   13 - 225   289 - 298

Sequence


           ________________________________________________________________________________________________________________________ 
 2o3j(A) : DQVFGKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIA 
         :                                                                                                                          
 2o3j(B) : ***FGKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________225_____________________ 
 2o3j(A) : QYAGGPKIVVEKSTVPVKAAESIGCILREAQKlKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISA 
         :                                                                                                                          
 2o3j(B) : QYAGGPKIVVEKSTVPVKaAESIGCILREAQKlKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISA 
           ________________________________________________________________________________________________225_____________________ 

           _______________________________________288_______298____________________________________________________________________ 
 2o3j(A) : VCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLME 
         :                                                                                                                          
 2o3j(B) : VCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLME 
           _______________________________________288_______298____________________________________________________________________ 

           _________________________________________________________________________________________________________                
 2o3j(A) : EHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQ                
         :                                                                                                                          
 2o3j(B) : EHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQ                
           _________________________________________________________________________________________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.5
Translation
(A) 		0.4
Closure
(%) 		96.7
Bending Residues
( green ) 		  225 - 226
  288 - 289
  298 - 304
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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