DynDom - Protein Domain Motions

Oxalate--Coa Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Oxalate--Coa Ligase
Conformer 1 (PDB)	8aff (D)
Conformer 2 (PDB)	8afg (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	429	0.47	11 - 443
2	52	0.86	444 - 505

Sequence

`________________________________________________________________________________________________________________________` `8aff(D) : ASFNDTFSVSDNVAVIVPETDTQVTYRDLSHMVGHFQTMFTNPNSPLYGAVFRQDTVAISMRNGLEFIVAFLGATMDAKIGAPLNPNYKEKEFNFYLNDLKSKAICVPKGTTKLQSSEI` `:` `8afg(A) : TASFNDTFSVSDNVAVIVPETDTQVTYRDLSHMVGHFQTMFTNPNSPLYGAVFRQDTVAISMRNGLEFIVAFLGATMDAKIGAPLNPNYKEKEFNFYLNDLKSKAICVPKGTTKLQSSEI` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `8aff(D) : LKSASTFGCFIVELAFDATRFRVEYDIYSPEDNYKRVIYRSLNNAKFVNTNPVKFPGFARSSDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPLFHVHGLIG` `:` `8afg(A) : LKSASTFGCFIVELAFDATRFRVEYDIYSPEDNYKRVIYRSLNNAKFVNTNPVKFPGFARSSDVALILHTSG--sTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPLFHVHGLIG` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `8aff(D) : VLLSTFRTQGSVVVPDGFHPKLFWDQFVKYNCNWFSCVPTISMIMLNMPKPNPFPHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPPGKRKPGTVGQPQGVTVV` `:` `8afg(A) : VLLSTFRTQGSVVVPDGFHPKLFWDQFVKYNCNWFSCVPTISMIMLNMPKPNPFPHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPPGKRKPGTVGQPQGVTVV` `________________________________________________________________________________________________________________________` `_________________________________________________________________435____________________________________________________` `8aff(D) : ILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVLKKGEK` `:` `8afg(A) : ILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRG--kISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQA---------` `_________________________________________________________________435____________________________________________________` `________________________________` `8aff(D) :` `MTYEELVNFLKKHLASFKIPTKVYFVDKLPKT` `:` `8afg(A) :` `-tYEELVNFLKKHLASFKIP***********` `________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	14.2
Translation (A)	0.6
Closure (%)	89.8
Bending Residues ( green )	435 - 444
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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