Acarbose/maltose Binding Protein Gach

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acarbose/maltose Binding Protein Gach
  Conformer 1
(PDB)
3k01 (A)
  Conformer 2
(PDB)
3jzj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 194 0.59   134 - 287   363 - 402
2 190 0.77   19 - 133   288 - 362

Sequence


           _____________________________________________________________________________________________________________________133 
 3k01(A) : AMVELSGTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEVAWVADFASIGYLAPLDGTPALDDGSDHLPQAAASTRYEGKTYAVPQVID 
         :                                                                                                                          
 3jzj(A) : ***ELSGTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEVAWVADFASIGYLAPLDGTPALDDGSDHLPQAAASTRYEGKTYAVPQVID 
           _____________________________________________________________________________________________________________________133 

           ________________________________________________________________________________________________________________________ 
 3k01(A) : TLALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEGGDLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGP 
         :                                                                                                                          
 3jzj(A) : TLALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEGGDLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGP 
           ________________________________________________________________________________________________________________________ 

           _______________________________287________________________________________________________________________362___________ 
 3k01(A) : WAIEDVKAGARFKDAGNLGVAPVPAGSAGQGSPQGGWNLSVYAGSKNLDASYAFVKYMSSAKVQQQTTEKLSLLPTRTSVYEVPSVADNEMVKFFKPAVDKAVERPWIAEGNALFEPIRL 
         :                                                                                                                          
 3jzj(A) : WAIEDVKAGARFKDAGNLGVAPVPAGSAGQGSPQGGWNLSVYAGSKNLDASYAFVKYMSSAKVQQQTTEKLSLLPTRTSVYEVPSVADNEMVKFFKPAVDKAVERPWIAEGNALFEPIRL 
           _______________________________287________________________________________________________________________362___________ 

           _______________________________                                                                                          
 3k01(A) : QMANVLSGETSPDEAAANTGDAYRKLLKDYK                                                                                          
         :                                                                                                                          
 3jzj(A) : QMANVLSGETSPDEAAANTGDAYRKLLKDYK                                                                                          
           _______________________________                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.4
Translation
(A)
-0.8
Closure
(%)
99.7
Bending Residues
( green )
  133 - 135
  287 - 288
  362 - 366
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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