Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB)
3b5u (I)
  Conformer 2
(PDB)
3j0s (I)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 334 2.14   9 - 32   58 - 367
2 25 3.66   33 - 57

Sequence


           ______________________________32______________________56________________________________________________________________ 
 3b5u(I) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 
         :                                                                                                                          
 3j0s(I) : *DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 
           ______________________________32______________________56________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3b5u(I) : QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 
         :                                                                                                                          
 3j0s(I) : QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3b5u(I) : ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 
         :                                                                                                                          
 3j0s(I) : ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 
           ________________________________________________________________________________________________________________________ 

           _______________                                                                                                          
 3b5u(I) : EYDEAGPSIVHRKCF                                                                                                          
         :                                                                                                                          
 3j0s(I) : EYDESGPSIVHRKCF                                                                                                          
           _______________                                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
34.2
Translation
(A)
0.3
Closure
(%)
86.9
Bending Residues
( green )
  32 - 33
  56 - 58
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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