Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1j6z (A)
  Conformer 2
(PDB)
1nlv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 265 0.96   6 - 9   22 - 23   71 - 75   83 - 89   99 - 109   122 - 357   370 - 370
2 91 0.95   10 - 21   24 - 70   76 - 82   90 - 98   110 - 121   358 - 369

Sequence


           _____9__________21_______________________________________________70___75_____82_____89_______98________109_________121__ 
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 1nlv(A) : DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHT--------kDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 
           _____9__________21_______________________________________________70___75_____82_____89_______98________109_________121__ 

           ________________________________________________________________________________________________________________________ 
 1j6z(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
         :                                                                                                                          
 1nlv(A) : FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSALEKSYELP 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________________357______ 
 1j6z(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
         :                                                                                                                          
 1nlv(A) : DGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYD 
           _______________________________________________________________________________________________________________357______ 

           366_________                                                                                                             
 1j6z(A) : EAGPSIVHR***                                                                                                             
         :                                                                                                                          
 1nlv(A) : ESGPSIVHRKCF                                                                                                             
           366_________                                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.2
Translation
(A)
0.2
Closure
(%)
5.0
Bending Residues
( green )
  9 - 10
  21 - 24
  70 - 72
  75 - 76
  82 - 83
  89 - 90
  98 - 99
  109 - 110
  121 - 122
  357 - 358
  366 - 370
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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