DynDom - Protein Domain Motions

Actin, Cytoplasmic 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Actin, Cytoplasmic 1
Conformer 1 (PDB)	3ub5 (A)
Conformer 2 (PDB)	2pav (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	218	0.9	8 - 152 163 - 176 280 - 299 325 - 373
2	111	0.48	155 - 161 179 - 274 276 - 279 302 - 305
3	20	0.26	275 - 275 306 - 324

Sequence

`________________________________________________________________________________________________________________________` `3ub5(A) : *AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF` `:` `2pav(A) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQ---------dSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMF` `________________________________________________________________________________________________________________________` `_________________________152______161____________176____________________________________________________________________` `3ub5(A) : ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD` `:` `2pav(A) : ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPD` `_________________________152______161____________176____________________________________________________________________` `___________________________274__279_________________299___305_______________323_________________________________________` `3ub5(A) : GQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE` `:` `2pav(A) : GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE` `___________________________274__279_________________299___305_______________323_________________________________________` `___________` `3ub5(A) : SGPSIVHRKCF` `:` `2pav(A) : AGPSIVHRKCF` `___________`

Morph

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Domain Pairs

Fixed Domain	Moving Domain	Rotation Angle	Translation (A)	Closure	Bending Residues
1	2	6.8	-0.6	89.1	152 - 155 161 - 163 176 - 181 279 - 280 299 - 302	Bending Region Analysis
1	3	6.1	-0.8	64.0	323 - 325	Bending Region Analysis
3	2	5.0	0.0	69.4	274 - 276 305 - 306	Bending Region Analysis