Anthranilate Phosphoribosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Anthranilate Phosphoribosyltransferase
  Conformer 1
(PDB)
2gvq (A)
  Conformer 2
(PDB)
1o17 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 229 0.67   67 - 148   152 - 152   182 - 203   208 - 236   243 - 341
2 106 0.47   3 - 66   149 - 151   153 - 181   204 - 207   237 - 242

Sequence


           ________________________________________________________________66______________________________________________________ 
 2gvq(A) : MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTgLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLE 
         :                                                                                                                          
 1o17(C) : MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAG-gLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLE 
           ________________________________________________________________66______________________________________________________ 

           ______________________148______________________________181___________________203_207__________________________236___242_ 
 2gvq(A) : ALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEE 
         :                                                                                                                          
 1o17(C) : ALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEE 
           ______________________148______________________________181___________________203_207__________________________236___242_ 

           ______________________________________________________________________________________________________                   
 2gvq(A) : VKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKS**                   
         :                                                                                                                          
 1o17(C) : VKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSSG                   
           ______________________________________________________________________________________________________                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.9
Translation
(A)
0.3
Closure
(%)
98.9
Bending Residues
( green )
  66 - 67
  148 - 153
  181 - 182
  203 - 205
  207 - 208
  236 - 237
  242 - 243
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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