Aspartate-Semialdehyde Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate-Semialdehyde Dehydrogenase
  Conformer 1
(PDB)
1gl3 (B)
  Conformer 2
(PDB)
1brm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 239 0.92   22 - 24   74 - 75   98 - 102   112 - 116   121 - 246   252 - 257   260 - 361
2 113 1.02   4 - 21   25 - 73   76 - 97   103 - 111   117 - 120   247 - 251   258 - 259   362 - 365

Sequence


           ___________________21_24_______________________________________________73______________________97__102______111__116_120 
 1gl3(B) : MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT 
         :                                                                                                                          
 1brm(B) : MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT 
           ___________________21_24_______________________________________________73______________________97__102______111__116_120 

           __________________________________________________________________________________________________________229___________ 
 1gl3(B) : DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR 
         :                                                                                                                          
 1brm(B) : DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWID--------- 
           __________________________________________________________________________________________________________229___________ 

           ________251___257_____________________________________________________________________________________________________36 
 1gl3(B) : EEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR 
         :                                                                                                                          
 1brm(B) : -eWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLR 
           ________251___257_____________________________________________________________________________________________________36 

           1______                                                                                                                  
 1gl3(B) : RMLRQLA                                                                                                                  
         :                                                                                                                          
 1brm(B) : RMLRQLA                                                                                                                  
           1______                                                                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
0.1
Closure
(%)
99.8
Bending Residues
( green )
  21 - 22
  24 - 25
  73 - 76
  97 - 98
  102 - 103
  111 - 112
  116 - 117
  120 - 121
  229 - 247
  251 - 252
  257 - 260
  361 - 362
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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