At-Rich Dna-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name At-Rich Dna-Binding Protein
  Conformer 1
(PDB)
2dt5 (A)
  Conformer 2
(PDB)
3ikt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 0.43   77 - 186
2 70 1.1   4 - 76

Sequence


           ___________________________________________________________________________76___________________________________________ 
 2dt5(A) : **KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG 
         :                                                                                                                          
 3ikt(A) : GMKVPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGT---gYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG 
           ___________________________________________________________________________76___________________________________________ 

           ____________________________________________________________________________________________                             
 2dt5(A) : RPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWREEMMG                             
         :                                                                                                                          
 3ikt(A) : RPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWR*****                             
           ____________________________________________________________________________________________                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.5
Translation
(A)
0.0
Closure
(%)
39.1
Bending Residues
( green )
  76 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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