Bifunctional P-450/nadph-P450 Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bifunctional P-450/nadph-P450 Reductase
  Conformer 1
(PDB)
4kf2 (A)
  Conformer 2
(PDB)
4dud (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 366 0.85   5 - 6   19 - 40   50 - 173   233 - 233   238 - 454
2 21 0.4   7 - 18   41 - 49
3 53 0.8   174 - 224   234 - 237

Sequence


           ____6__________18____________________40_______49________________________________________________________________________ 
 4kf2(A) : *KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFFGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVD 
         :                                                                                                                          
 4dud(B) : IKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTCYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLLTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVD 
           ____6__________18____________________40_______49________________________________________________________________________ 

           _______________________________________________171__________________________________________________224_________________ 
 4kf2(A) : IAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRA--dDPAYDENKRQFQEDIKVMNDLVDKIIADRKAS--qSDDLLTHMLNGK 
         :                                                                                                                          
 4dud(B) : IAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGK 
           _______________________________________________171__________________________________________________224_________________ 

           ________________________________________________________________________________________________________________________ 
 4kf2(A) : DPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLH 
         :                                                                                                                          
 4dud(B) : DPETGEPLDDENIRYQIITFLIAGHESTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________                         
 4kf2(A) : RDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGG                         
         :                                                                                                                          
 4dud(B) : RDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETQLLKPEGFVVKAKSKKIPLGG                         
           ________________________________________________________________________________________________                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.4
Translation
(A)
0.2
Closure
(%)
46.0
Bending Residues
( green )
  6 - 8
  18 - 19
  40 - 41
  49 - 50
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
24.4
Translation
(A)
-0.6
Closure
(%)
99.8
Bending Residues
( green )
  171 - 174
  224 - 238
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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