Atp Synthase Subunit Beta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Subunit Beta
  Conformer 1
(PDB)
1h8e (D)
  Conformer 2
(PDB)
1h8e (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 264 0.44   34 - 35   48 - 49   94 - 96   100 - 106   116 - 186   194 - 197   232 - 237   239 - 239   245 - 261   289 - 297   305 - 317   322 - 382   405 - 472
2 171 0.36   16 - 33   36 - 47   50 - 93   97 - 99   107 - 115   187 - 193   198 - 231   238 - 238   240 - 244   262 - 288   298 - 304   318 - 321
3 22 1.0   383 - 404

Sequence


           _______________________33____________47____________________________________________93_96_99____106______115_____________ 
 1h8e(D) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV 
         :                                                                                                                          
 1h8e(F) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV 
           _______________________33____________47____________________________________________93_96_99____106______115_____________ 

           _______________________________________________________186____193_197_______________________________231___237____244____ 
 1h8e(D) : EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 
         :                                                                                                                          
 1h8e(F) : EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 
           _______________________________________________________186____193_197_______________________________231___237____244____ 

           __________261________________________288______297____304__________317_321_______________________________________________ 
 1h8e(D) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 
         :                                                                                                                          
 1h8e(F) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 
           __________261________________________288______297____304__________317_321_______________________________________________ 

           ___________382___________________404_______________________________________________________________________              
 1h8e(D) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE              
         :                                                                                                                          
 1h8e(F) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA*              
           ___________382___________________404_______________________________________________________________________              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
0.0
Closure
(%)
97.1
Bending Residues
( green )
  33 - 36
  47 - 50
  93 - 94
  96 - 97
  99 - 100
  106 - 107
  115 - 116
  186 - 187
  193 - 194
  197 - 198
  231 - 232
  237 - 240
  244 - 245
  261 - 262
  288 - 289
  297 - 298
  304 - 305
  317 - 318
  321 - 322
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
13.6
Translation
(A)
0.4
Closure
(%)
85.4
Bending Residues
( green )
  382 - 383
  404 - 405
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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