Calmodulin (Vertebrate)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin (Vertebrate)
  Conformer 1
(PDB)
1cll  
  Conformer 2
(PDB)
1cdl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 1.25   76 - 144
2 69 0.95   7 - 75

Sequence


           ___________________________________________________________________72___________________________________________________ 
 1cll    : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 1cdl(A) : *TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
           ___________________________________________________________________72___________________________________________________ 

           ________________________                                                                                                 
 1cll    : MIREADIDGDGQVNYEEFVQMMTA                                                                                                 
         :                                                                                                                          
 1cdl(A) : MIREADIDGDGQVNYEEFVQMMT*                                                                                                 
           ________________________                                                                                                 

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
154.0
Translation
(A)
-2.1
Closure
(%)
88.6
Bending Residues
( green )
  72 - 78
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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