Cathepsin S

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cathepsin S
  Conformer 1
(PDB)
1glo (A)
  Conformer 2
(PDB)
1al7  
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 47 13.07   15 - 53   72 - 79
2 42 13.18   54 - 68   80 - 106

Sequence


           ________________________________________________________________________________________________________________________ 
 1glo(A) : **********************************************************************************LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQL 
         :                                                                                                                          
 1al7    : MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 
           ________________________________________________________________________________________________________________________ 

           ____________52______________68_________79_______________________________________________________________________________ 
 1glo(A) : KLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC 
         :                                                                                                                          
 1al7    : PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLgLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGI 
           ___________134_____________150________161_______________________________________________________________________________ 

           ______________________________________________________________________________________________________________           
 1glo(A) : TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI***************************************************           
         :                                                                                                                          
 1al7    : IVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD           
           ______________________________________________________________________________________________________________           

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
160.5
Translation
(A)
3.2
Closure
(%)
99.7
Bending Residues
( green )
  52 - 54
  68 - 72
  79 - 80
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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