Dnab Replication Fork Helicase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dnab Replication Fork Helicase
  Conformer 1
(PDB)
2q6t (A)
  Conformer 2
(PDB)
2q6t (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 247 1.63   172 - 438
2 141 0.78   7 - 147

Sequence


           ________________________________________________________________________________________________________________________ 
 2q6t(A) : ***IPPHSLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGE 
         :                                                                                                                          
 2q6t(B) : EGPIPPHSLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGE 
           ________________________________________________________________________________________________________________________ 

           ______________________146_______________________________________________________________________________________________ 
 2q6t(A) : AMRLAYEEAGSLDEILDTAGKKILEVALTKTDTEARPMRELVHETFEHIEA-vRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMC 
         :                                                                                                                          
 2q6t(B) : AMRLAYEEAGSLDEILDTAGKKILEVAL------aRPMRELVHETFEHIEALvRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMC 
           ______________________146_______________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2q6t(A) : SEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPnRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLS 
         :                                                                                                                          
 2q6t(B) : SEARIDMNRVRl---TDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPnRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________                                                          
 2q6t(A) : DLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRFNDL                                                          
         :                                                                                                                          
 2q6t(B) : DLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRFNDL                                                          
           _______________________________________________________________                                                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
74.3
Translation
(A)
-29.5
Closure
(%)
95.7
Bending Residues
( green )
  146 - 184
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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