Ecorv Endonuclease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ecorv Endonuclease
  Conformer 1
(PDB)
1az3 (A)
  Conformer 2
(PDB)
1eoo (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 148 0.94   4 - 9   42 - 138   140 - 140   164 - 215
2 34 1.18   18 - 41   139 - 139   141 - 163

Sequence


           ______8________________________41_______________________________________________________________________________________ 
 1az3(A) : SLRSDLIN--------yDVCGIISAEGKIYPL-------sTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYT--eNEK-kFTLGGYTSFIRNNTKNI 
         :                                                                                                                          
 1eoo(B) : SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNI 
           ______8________________________41_______________________________________________________________________________________ 

           ______________138______________________163______________________________________________________________________________ 
 1az3(A) : VYPFDQYIAHWIIGYVYTRV-------kTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAG-----nIGSIHAHYKDFVEGKGIFDSEDEFLDYWR************************ 
         :                                                                                                                          
 1eoo(B) : VYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIY 
           ______________138______________________163______________________________________________________________________________ 

           ____                                                                                                                     
 1az3(A) : ****                                                                                                                     
         :                                                                                                                          
 1eoo(B) : RGRK                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.2
Translation
(A)
-0.6
Closure
(%)
71.7
Bending Residues
( green )
  8 - 18
  41 - 42
  138 - 141
  163 - 164
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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