Endo-1,4-Beta-Xylanase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endo-1,4-Beta-Xylanase A
  Conformer 1
(PDB)
2b46 (X)
  Conformer 2
(PDB)
2b45 (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 157 0.19   3 - 70   80 - 109   124 - 160   162 - 183
2 24 0.16   71 - 79   110 - 123   161 - 161

Sequence


           ____________________________________________________________________70_______79___________________________109___________ 
 2b46(X) : ASTDYWQNWTFGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
         :                                                                                                                          
 2b45(X) : ASTDYWQNWTFGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
           ____________________________________________________________________70_______79___________________________109___________ 

           123__________________________________160_________________________                                                        
 2b46(X) : DDTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW                                                        
         :                                                                                                                          
 2b45(X) : DDTTFTQYWSVRQSKRPTGSNATITFTNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW                                                        
           123__________________________________160_________________________                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.3
Translation
(A)
0.0
Closure
(%)
23.0
Bending Residues
( green )
  70 - 71
  79 - 80
  109 - 111
  123 - 124
  160 - 162
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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