Epithelial Discoidin Domain-Containing Receptor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Epithelial Discoidin Domain-Containing Receptor 1
  Conformer 1
(PDB)
4bkj (A)
  Conformer 2
(PDB)
3zos (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 0.79   676 - 686   705 - 911
2 90 0.7   604 - 675   687 - 704

Sequence


           _________________________________________________________________________675________686_____________702_________________ 
 4bkj(A) : MPRVDFPRSRLRFKEKLGEGQFGEVHLCEVDSPQDLVSLDFPLNVRKGHPLLVAVKILRPDATKNARNDFLKEVKIMSRLKDPNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLE 
         :                                                                                                                          
 3zos(A) : **RVDFPRSRLRFKEKLGEGQFGEVHLCEVDSPQDLVSLDFPLNVRKGHPLLVAVKILRPDATKNARNDFLKEVKIMSRLKDPNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLE 
           _________________________________________________________________________675________686_____________702_________________ 

           ________________________________________________________________________________________________________________________ 
 4bkj(A) : D----pTISYPMLLHVAAQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYR----aVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVLMLCRAQPFGQLTD 
         :                                                                                                                          
 3zos(A) : DaAQGPTISYPMLLHVAAQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVLMLCRAQPFGQLTD 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________                                                          
 4bkj(A) : EQVIENAGEFFRDQGRQVYLSRPPACPQGLYELMLRCWSRESEQRPPFSQLHRFLAEDALNTV                                                          
         :                                                                                                                          
 3zos(A) : EQVIENAGEFFRDQGRQVYLSRPPACPQGLYELMLRCWSRESEQRPPFSQLHRFLAEDALNTV                                                          
           _______________________________________________________________                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.2
Translation
(A)
-0.5
Closure
(%)
3.5
Bending Residues
( green )
  675 - 676
  686 - 687
  702 - 707
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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