Exportin-T

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Exportin-T
  Conformer 1
(PDB)
3icq (T)
  Conformer 2
(PDB)
3ibv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 475 2.16   258 - 262   264 - 265   270 - 271   273 - 753
2 260 1.6   4 - 257   263 - 263   266 - 269   272 - 272
3 162 1.23   754 - 952

Sequence


           ________________________________________________________________________________________________________________________ 
 3icq(T) : *SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY 
         :                                                                                                                          
 3ibv(A) : MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3icq(T) : PSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 
         :                                                                                                                          
 3ibv(A) : PSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 
           ________________________________________________________________________________________________________________________ 

           ______________257__262____269___________________________________________________________________________________________ 
 3icq(T) : QIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSsTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRK 
         :                                                                                                                          
 3ibv(A) : QIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK--tDPNFDEHVAKLINAQGVELVAIKSDPS--sPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRK 
           ______________257__262____269___________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3icq(T) : ESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 
         :                                                                                                                          
 3ibv(A) : ESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3icq(T) : KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--vNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 
         :                                                                                                                          
 3ibv(A) : KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVT--dAPVPTLN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3icq(T) : SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR-eEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSG 
         :                                                                                                                          
 3ibv(A) : SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLS--eNIISVYCSLMAIGNFAKGFPARGeEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSG 
           ________________________________________________________________________________________________________________________ 

           _________________________752____________________________________________________________________________________________ 
 3icq(T) : RIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSIL 
         :                                                                                                                          
 3ibv(A) : RIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSA----tDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSIL 
           _________________________752____________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3icq(T) : HFANLVpATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNqSLVVLGELAGLQKIILE-------sYLVTVYFPTVNFPDVMASEYLQALSNLsRSFKQFFQKFIQALKS 
         :                                                                                                                          
 3ibv(A) : HFA---pATQKSSIALVSKMVSL-------aGFENFTLSLTPLCFEMPVN--lVVLGELAGLQKIILEKLGDIYKSYLVTVYFPT----dVMASEYLQAiQALKS*************** 
           ________________________________________________________________________________________________________________________ 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.5
Translation
(A)
-3.0
Closure
(%)
52.0
Bending Residues
( green )
  257 - 258
  262 - 266
  269 - 281
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
24.2
Translation
(A)
-0.9
Closure
(%)
98.2
Bending Residues
( green )
  752 - 754
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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