F17-Ag Lectin Domain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name F17-Ag Lectin Domain
  Conformer 1
(PDB)
1o9z (A)
  Conformer 2
(PDB)
1m15 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 44 13.52   36 - 58   90 - 110
2 25 8.29   5 - 35

Sequence


           ________________________________________________________________________________________________________________________ 
 1o9z(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 1m15(A) : VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFII 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1o9z(A) : ******************************************************************************************************************AVSFIG 
         :                                                                                                                          
 1m15(A) : STRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKT 
           ________________________________________________________________________________________________________________________ 

           ___________________33___________________________________________________________________________________________________ 
 1o9z(A) : STENDVGPSLGSYSRlPFVYDTRNKIGYQNANVWHISKGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTKYSRGTAMSGNSWENVFSGWCVGANTASTQGLSVRVTPVILKR 
         :                                                                                                                          
 1m15(A) : VYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA**** 
           __________________262___________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 1o9z(A) : NsSRYSVQKTSIGSIRMRPYNGSSAGSVQTTVNFSLNPFTLNDT                                                                             
         :                                                                                                                          
 1m15(A) : ********************************************                                                                             
           ____________________________________________                                                                             

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
130.6
Translation
(A)
-12.3
Closure
(%)
59.5
Bending Residues
( green )
  33 - 36
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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