Ferredoxin--Nadp Reductase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferredoxin--Nadp Reductase 2
  Conformer 1
(PDB)
3lzw (A)
  Conformer 2
(PDB)
3ab1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 183 1.11   8 - 123   249 - 315
2 124 3.53   124 - 248

Sequence


           _______________________________________________________________________________________________________________________1 
 3lzw(A) : MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEETHY-SKTVIITA 
         :                                                                                                                          
 3ab1(A) : *****DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAA 
           _______________________________________________________________________________________________________________________1 

           21______________________________________________________________________________________________________________________ 
 3lzw(A) : GNGAFKPRKL-ELENAEQYEGKNLHYFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVN-VLTPFVPAELIGEDK----IEQLVLEEVKGDR 
         :                                                                                                                          
 3ab1(A) : GLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGS- 
           29______________________________________________________________________________________________________________________ 

           ____________248_________________________________________________________________________________                         
 3lzw(A) : KEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPKARVQPLHSTSLF                         
         :                                                                                                                          
 3ab1(A) : KWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIKPG************                         
           ____________261_________________________________________________________________________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
45.2
Translation
(A)
0.6
Closure
(%)
82.2
Bending Residues
( green )
  121 - 124
  248 - 249
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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