Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Subunit 2
  Conformer 1
(PDB)
1fto (A)
  Conformer 2
(PDB)
1ftl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 148 0.31   7 - 108   117 - 117   200 - 204   206 - 206   210 - 210   219 - 256
2 102 0.2   109 - 116   118 - 199   205 - 205   207 - 209   211 - 218

Sequence


           _____________________________________________________________________________________________________108_____116________ 
 1fto(A) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
         :                                                                                                                          
 1ftl(A) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
           _____________________________________________________________________________________________________108_____116________ 

           ________________________________________________________________________199__204__209______218__________________________ 
 1fto(A) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
         :                                                                                                                          
 1ftl(A) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
           ________________________________________________________________________199__204__209______218__________________________ 

           _________________                                                                                                        
 1fto(A) : GLLDKLKNKWWYDKGEC                                                                                                        
         :                                                                                                                          
 1ftl(A) : GLLDKLKNKWWYDKGEC                                                                                                        
           _________________                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
0.3
Closure
(%)
100.0
Bending Residues
( green )
  108 - 110
  116 - 118
  199 - 200
  204 - 207
  209 - 211
  218 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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