Glutamate Receptor Delta-2 Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Delta-2 Subunit
  Conformer 1
(PDB)
2v3t (A)
  Conformer 2
(PDB)
2v3u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 137 1.01   4 - 105   218 - 259
2 93 1.28   106 - 216

Sequence


           ______________________________________________________________________________________________________105_______________ 
 2v3t(A) : *GVVLRVVTVLEEPFV-vSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSP----tWNGLVGELVFKRADIGISALTITPDRENVVDFTTRY-dYSVGVLLRR--sIQSL 
         :                                                                                                                          
 2v3u(A) : GGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSL 
           ______________________________________________________________________________________________________105_______________ 

           ______________________________________________________________________________________216_______________________________ 
 2v3t(A) : QDLSKQTDIPYGTVLDSAVYQHVR-kGLNP-----sySQ-wR-iN-nNVLEsQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVtVADRGYGIALQHGSPYRDVFSQRILELQQSG 
         :                                                                                                                          
 2v3u(A) : QDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRnNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVG-aDRGYGIALQHGSPYRDVFSQRILELQQSG 
           ______________________________________________________________________________________214_______________________________ 

           ________________                                                                                                         
 2v3t(A) : D-dILKHKWWPKNGQC                                                                                                         
         :                                                                                                                          
 2v3u(A) : DMDILKHKWWPKNG**                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.9
Translation
(A)
0.8
Closure
(%)
95.4
Bending Residues
( green )
  105 - 106
  216 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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