Glutamate Receptor, Ionotropic Kainate 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 3
  Conformer 1
(PDB)
3u92 (A)
  Conformer 2
(PDB)
1fto (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 138 1.42   7 - 108   214 - 249
2 109 1.46   109 - 213   250 - 253

Sequence


           ________________________________________________________________________________________________________108_____________ 
 3u92(A) : NRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQD-DKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPID 
         :                                                                                                                          
 1fto(A) : **TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 
           ________________________________________________________________________________________________________109_____________ 

           ____________________________________________________________________________________________212_________________________ 
 3u92(A) : SADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFM-SSKPSALVKNNEEGIQRTLTAD--YALLMESTTIEYITQRN-CNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQ 
         :                                                                                                                          
 1fto(A) : SAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLN 
           ____________________________________________________________________________________________217_________________________ 

           _________249________                                                                                                     
 3u92(A) : EEDKLHIMKEKWWRGSG-CP                                                                                                     
         :                                                                                                                          
 1fto(A) : EQGLLDKLKNKWWYDKGEC*                                                                                                     
           _________254________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.1
Translation
(A)
-0.1
Closure
(%)
93.8
Bending Residues
( green )
  108 - 109
  212 - 214
  249 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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