Glutamate Receptor, Ionotropic Kainate 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 3
  Conformer 1
(PDB) 		3u92 (B)
  Conformer 2
(PDB) 		1fto (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 1.54   7 - 108   194 - 194   199 - 200   212 - 249   251 - 253
2 101 1.37   109 - 193   195 - 198   201 - 211   250 - 250

Sequence


           ________________________________________________________________________________________________________108_____________ 
 3u92(B) : NRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQD-DKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPID 
         :                                                                                                                          
 1fto(A) : **TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 
           ________________________________________________________________________________________________________109_____________ 

           ________________________________________________________________________193__198___________211__________________________ 
 3u92(B) : SADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFM-SSKPSALVKNNEEGIQRTLTAD--YALLMESTTIEYITQRN-CNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQ 
         :                                                                                                                          
 1fto(A) : SAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLN 
           ________________________________________________________________________197__202___________216__________________________ 

           _________249________                                                                                                     
 3u92(B) : EEDKLHIMKEKWWRGSG-CP                                                                                                     
         :                                                                                                                          
 1fto(A) : EQGLLDKLKNKWWYDKGEC*                                                                                                     
           _________254________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.6
Translation
(A) 		0.0
Closure
(%) 		96.2
Bending Residues
( green ) 		  108 - 109
  193 - 195
  198 - 201
  211 - 212
  249 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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