Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 1
  Conformer 1
(PDB) 		4kcc (A)
  Conformer 2
(PDB) 		4nf6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 174 0.98   6 - 145   242 - 288
2 96 0.53   146 - 241

Sequence


           ________________________________________________________________________________________________________________________ 
 4kcc(A) : STRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNhTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERV----kEWNGMMGELLSGQADMIVAPLTINNER 
         :                                                                                                                          
 4nf6(A) : *TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNhTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNsNKKEWNGMMGELLSGQADMIVAPLTINNER 
           ________________________________________________________________________________________________________________________ 

           ___________145_____________________________________________________________________________________________241__________ 
 4kcc(A) : AQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG 
         :                                                                                                                          
 4nf6(A) : AQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG 
           ___________145_____________________________________________________________________________________________241__________ 

           _______________________________________                                                                                  
 4kcc(A) : IGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC                                                                                  
         :                                                                                                                          
 4nf6(A) : IGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC                                                                                  
           _______________________________________                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.4
Translation
(A) 		-0.7
Closure
(%) 		99.7
Bending Residues
( green ) 		  145 - 146
  241 - 245
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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