Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 1
  Conformer 1
(PDB)
4e0x (A)
  Conformer 2
(PDB)
3gba (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 132 0.55   7 - 89   92 - 104   192 - 192   216 - 250
2 110 0.58   90 - 91   105 - 191   193 - 215

Sequence


           ____________________________________________________________________________________89____________104___________________ 
 4e0x(A) : RTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSA 
         :                                                                                                                          
 3gba(C) : *TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSA 
           ____________________________________________________________________________________89____________104___________________ 

           _________________________________________________________________191_____________________215____________________________ 
 4e0x(A) : DDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKL 
         :                                                                                                                          
 3gba(C) : DDLAKQ-kIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRq-SALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKL 
           _________________________________________________________________191_____________________215____________________________ 

           ______________                                                                                                           
 4e0x(A) : HMMKEKWWR*****                                                                                                           
         :                                                                                                                          
 3gba(C) : HMMKEKWWRGNGCP                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.7
Translation
(A)
-0.4
Closure
(%)
99.3
Bending Residues
( green )
  89 - 92
  104 - 105
  191 - 193
  215 - 216
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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