6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
  Conformer 1
(PDB)
1hka (A)
  Conformer 2
(PDB)
1q0n (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 93 0.36   20 - 37   56 - 76   98 - 151
2 29 1.75   13 - 19   38 - 55   77 - 80

Sequence


           _________________19________________37________________55___________________76____________________________________________ 
 1hka(A) : TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKN 
         :                                                                                                                          
 1q0n(A) : TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKN 
           _________________19________________37________________55___________________76____________________________________________ 

           ______________________________________                                                                                   
 1hka(A) : RGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW                                                                                   
         :                                                                                                                          
 1q0n(A) : RGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW                                                                                   
           ______________________________________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.9
Translation
(A)
0.3
Closure
(%)
96.5
Bending Residues
( green )
  19 - 23
  37 - 38
  55 - 57
  76 - 98
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download