Alcohol Dehydrogenase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alcohol Dehydrogenase 1
  Conformer 1
(PDB)
2hcy (A)
  Conformer 2
(PDB)
2hcy (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 172 0.67   3 - 42   48 - 124   126 - 156   296 - 300   305 - 311   315 - 323   343 - 345
2 25 0.85   43 - 47   125 - 125   324 - 342
3 146 0.74   157 - 295   301 - 304   312 - 314

Sequence


           ________________________________________42___47_________________________________________________________________________ 
 2hcy(A) : SIPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYT 
         :                                                                                                                          
 2hcy(D) : SIPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYT 
           ________________________________________42___47_________________________________________________________________________ 

           _124_____________________________156____________________________________________________________________________________ 
 2hcy(A) : HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 
         :                                                                                                                          
 2hcy(D) : HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 
           _124_____________________________156____________________________________________________________________________________ 

           ____________________________________________________295__300_304____311_________323________________342_____              
 2hcy(A) : GVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK              
         :                                                                                                                          
 2hcy(D) : GVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK              
           ____________________________________________________295__300_304____311_________323________________342_____              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.7
Translation
(A)
0.1
Closure
(%)
99.1
Bending Residues
( green )
  42 - 43
  47 - 48
  124 - 126
  323 - 324
  342 - 343
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
12.5
Translation
(A)
-0.6
Closure
(%)
97.4
Bending Residues
( green )
  156 - 157
  295 - 296
  300 - 301
  304 - 305
  311 - 317
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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