Arginine Repressor/activator Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arginine Repressor/activator Protein
  Conformer 1
(PDB)
1f9n (C)
  Conformer 2
(PDB)
1f9n (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 82 1.16   66 - 147
2 61 1.87   5 - 65

Sequence


           ___________________________________________________________62___________________________________________________________ 
 1f9n(C) : NKGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGT 
         :                                                                                                                          
 1f9n(A) : *KGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGT 
           ___________________________________________________________62___________________________________________________________ 

           ____________________________                                                                                             
 1f9n(C) : ICGDDTILIICRTPEDTEGVKNRLLELL                                                                                             
         :                                                                                                                          
 1f9n(A) : ICGDDTILIICRTPEDTEGVKNRLLELL                                                                                             
           ____________________________                                                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
41.5
Translation
(A)
-3.0
Closure
(%)
69.5
Bending Residues
( green )
  62 - 74
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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