Calcium-Gated Potassium Channel Mthk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calcium-Gated Potassium Channel Mthk
  Conformer 1
(PDB)
2fy8 (H)
  Conformer 2
(PDB)
1lnq (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 146 1.01   117 - 262
2 72 0.77   263 - 334

Sequence


           ________________________________________________________________________________________________________________________ 
 2fy8(H) : *******************************************************************************SRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS 
         :                                                                                                                          
 1lnq(D) : PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLrHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________253______________________ 
 2fy8(H) : GANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKL 
         :                                                                                                                          
 1lnq(D) : GANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKL 
           _______________________________________________________________________________________________253______________________ 

           _____________________________________________________________                                                            
 2fy8(H) : EGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA                                                            
         :                                                                                                                          
 1lnq(D) : EGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA                                                            
           _____________________________________________________________                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.6
Translation
(A)
0.5
Closure
(%)
98.1
Bending Residues
( green )
  253 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download