Core Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Core Antigen
  Conformer 1
(PDB)
2g33 (C)
  Conformer 2
(PDB)
1qgt (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 108 1.37   8 - 115
2 21 1.03   116 - 136

Sequence


           ________________________________________________________________________________________________________________115_____ 
 2g33(C) : MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALRQAILAWGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISALTFGRETVLEYLV 
         :                                                                                                                          
 1qgt(B) : MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTASALYREALESPEHCSPHHTALRQAILCWGELMTLATWVGNNLEDPASRDLVVNYVNTNMGLKIRQLLWFHISCLTFGRETVLEYLV 
           ________________________________________________________________________________________________________________115_____ 

           ___________________________                                                                                              
 2g33(C) : SFGVWIRTPPAYRPPNAPILSTLPETT                                                                                              
         :                                                                                                                          
 1qgt(B) : SFGVWIRTPPAYRPPNAPILSTL****                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.6
Translation
(A)
0.4
Closure
(%)
23.4
Bending Residues
( green )
  115 - 116
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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