Fibritin, Fiber Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fibritin, Fiber Protein
  Conformer 1
(PDB)
1v1h (A)
  Conformer 2
(PDB)
1v1i (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 72 1.83   321 - 459
2 22 0.43   460 - 481

Sequence


           ____________________________________________________________________389________________________________                  
 1v1h(A) : VSIKKSSGLNFDNTAIAINAGKGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITIGGSGYIPEAPRDGQAYVRKDGEWVLLSTFL                  
         :                                                                                                                          
 1v1i(C) : VSIKKSSGLNFDNTAIAINAGKGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITI-----iPEAPRDGQAYVRKDGEWVLLSTFL                  
           ____________________________________________________________________389________________________________                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
49.6
Translation
(A)
1.9
Closure
(%)
88.4
Bending Residues
( green )
  389 - 460
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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