Histidyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Histidyl-Trna Synthetase
  Conformer 1
(PDB)
1h4v (B)
  Conformer 2
(PDB)
1adj (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 332 1.32   4 - 170   229 - 256   266 - 418
2 67 1.48   171 - 228   257 - 265

Sequence


           ________________________________________________________________________________________________________________________ 
 1h4v(B) : TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGA------kEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERP----y 
         :                                                                                                                          
 1adj(D) : TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRY 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________170_______________________________________________________228_____________ 
 1h4v(B) : RQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVE 
         :                                                                                                                          
 1adj(D) : RQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVE 
           ______________________________________________170_______________________________________________________228_____________ 

           ____________256_________________________________________________________________________________________________________ 
 1h4v(B) : RHLERLSVPYELEPALVRGLDYYVRTAFEVHH------sALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPRLRAEYAL 
         :                                                                                                                          
 1adj(D) : RHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPRLRAEYAL 
           ____________256_________________________________________________________________________________________________________ 

           ____________________________________________________________                                                             
 1h4v(B) : APRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG                                                             
         :                                                                                                                          
 1adj(D) : APRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG                                                             
           ____________________________________________________________                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.1
Translation
(A)
0.1
Closure
(%)
11.6
Bending Residues
( green )
  170 - 171
  228 - 229
  256 - 266
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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