Immunoglobulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Immunoglobulin
  Conformer 1
(PDB) 		1b6d (B)
  Conformer 2
(PDB) 		1ce1 (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 109 2.11   3 - 106   167 - 171
2 98 0.69   107 - 166   172 - 209

Sequence


           _______________________________________________________________________________________________________106______________ 
 1b6d(B) : DIQMTQSPSSLSASVGDRVTITCQASQDISSYLNWYQQKPGKAPKLLIHAASSLETGVPSRFSGSGSGTDFSFTISSLQPEDLATYYCQQYDSLPLTFGGGTKVEIKRTVAAPSVFIFPP 
         :                                                                                                                          
 1ce1(L) : DIQMTQSPSSLSASVGDRVTITCKASQNIDKYLNWYQQKPGKAPKLLIYNTNNLQTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQHISRPRTFGQGTKVEIKRTVAAPSVFIFPP 
           _______________________________________________________________________________________________________106______________ 

           __________________________________________165_______________________________________________                             
 1b6d(B) : SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG                             
         :                                                                                                                          
 1ce1(L) : SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR*                             
           __________________________________________165_______________________________________________                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		81.4
Translation
(A) 		-2.5
Closure
(%) 		99.9
Bending Residues
( green ) 		  106 - 110
  165 - 172
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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