Immunoglobulin G1 (Igg1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Immunoglobulin G1 (Igg1)
  Conformer 1
(PDB)
3mcg (2)
  Conformer 2
(PDB)
1mcb (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 122 1.82   4 - 112   116 - 119   138 - 141   143 - 143   172 - 175
2 85 1.92   113 - 115   120 - 137   142 - 142   144 - 171   176 - 210

Sequence


           __________________________________________________________________________________________________________109___115_119_ 
 3mcg(2) : XSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVT 
         :                                                                                                                          
 1mcb(A) : PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVT 
           __________________________________________________________________________________________________________109___115_119_ 

           ______________137_141_________________________169__174__________________________________________                         
 3mcg(2) : LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS                         
         :                                                                                                                          
 1mcb(A) : LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS                         
           ______________137_141_________________________169__174__________________________________________                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.0
Translation
(A)
-1.2
Closure
(%)
94.1
Bending Residues
( green )
  109 - 113
  115 - 116
  119 - 120
  137 - 138
  141 - 144
  169 - 172
  174 - 176
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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